Matt -
Regarding restoring a more natural hydrograph on the upper Skagit. My concerns is that the current modifications to that hydrograph is affecting the salmonid production in the name of cheaper power. I feel strongly that given those concerns it is on City of Seattle light as part of the re-licensing evaluating the impacts of those changes and what actions could be taken to minimize those impacts.
My concerns fall into 3 broad hydrograph alternations. Fortunately the Skagit at the power house and the Sauk have similar average daily discharges (Upper Skagit average flow 4,822 cfs and the Sauk at Sauk 4,699 cfs). Given the similarity of the the headwaters of those two portions of the basin comparing hydrographs of the two provide some insight of those modifications.
First concern is prolonging the peak run-off period in the upper Skagit. The projects capture run-off and release that water over a long period. On the Sauk the peak run off period typically the peak run-off lasts approximately 5 months, on the upper Skagit the period last 8 months. My concerns is that extend run-off puts additional stress and need for complex habitats to provide refuge for fish like juvenile steelhead from those higher flows - over-winter habitats if you will. The licensing process needs to answer the question of what the over survival impacts of steelhead parr (and other juvenile salmonids) of those extended periods of elevated flows. Skagit basin run-offs are much longer than say that on the OP where that period typically 3 months or so - the difference between hydrographs driven by snow melt versus rain fall.
A second concern is the daily flow changes associated with peak power generation. The water is released to met peak power needs (more valuable) by releasing water quickly to a higher level and then dropping those flows equally quickly. Over the course of a year on the upper Skagit those kinds of flow fluctuations occur on nearly half of the days of the year. Typically it takes about 1.5 hours to rise the flow and an equal time to lower those flows with those flow changes often a 1,000 cfs or more. There are similar daily flow changes on the Sauk associated with the snow melt during the day. These changes are confined to the late spring/summer period with roughly 12 hours needed for the flows to go from the daily low to the high and about the same for the drop- a much gradual process. Questions to be answered fall into two main areas. 1) are those abrupt flow changes increasing the risk of stranding or trapping juvenile salmonids. Are the salmon using complex habitats at increased risk? or our those habitats less available? And 2) what is the impacts on the aquatic insect population due to the sudden flow changes. There are several studies that have shown that sudden flow increased associated with peak power generation can dislodge the smaller insects limiting the over-all availability of the biomass of insects that form the primary food base for those juvenile salmonids. Across the west there are a number of examples where changing the hydrograph from peak power generation to a more of run of the river hydrograph leading to dramatic increases in the biomass (both numbers and size) of trout populations.
The third area of concern is the lack of larger flow events on the upper Skagit . Since 1954 at the power house there has been only 4 flow events larger than 30,000 cfs with the largest being 36,800. On the Sauk in the same period the largest has been 106,000 cfs with more than 40 events of more than 40,000 cfs in just the 20 years between 1997 and 2016 there were 28 events over 30,000. I believe that those higher flows are key to forming and refreshing the complex habitats key to salomid production. While I'm not advocating for some of those large floods for the Skagit there is no reason that on occasion there moderate flood waters could be released at times other than peaks of basin wide flooding so to not amplify the down year floods. As part of the licensing process some modeling/experimentation is needed to determine what flows are need for channel changing flows. I'm guessing that once or twice a decade flow events in the range of 40,000 to 60,000 might be needed but again it should be on the City to make the case as to why those changes are not needed.
Obviously these are complex issues and I just touched the surface but I feel strongly ignoring the potential importance of those issues will continue limit the salmonid production in the entire main stem Skagit.
Curt