the bakraft is very small and not very good for overnight trips, Aire is coming out with an expedition sized bakraft for this very reason in the spring 2017. It isn't really a good fishing platform. I actually am in line to get 2 of the new expedition sized aire bakrafts this winter, but not for fishing, but for hiking into multiday whitewater kayaking trips.
Maybe a trailer is what you want so you can keep your boat rigged.
Or maybe a raft instead of a pontoon, rafts with a simple rowing frame rig faster than a pontoon boat. Usually 4 straps, (1 on each corner) and you are off and running.
maybe something along the lines of a hyside mini-max, aire trib-9.5 or the maxxon xsb-320 for a small raft, with a minimal frame that only requires 4 straps would work better and be faster to rig without using a trailer. You could certainly put enough gear in any of these small rafts for multiday trips packing light and handle rough water.
Or you might want a different transport rig, I can put my Aire puma raft in the back of my pickup fully rigged and drive 70mph down the road no problem.
Fishing can be done out of an inflatable kayak, but not really for standing up. I do however quite well sitting down fly casting and chucking hardware for salmon. If you think a kayak may be your new method, then several boats could be recommended. I personally use older model aire lynx I and aire lynx II rigs.