Quick update: Pretty sure they are fixed...testing them out tomorrow and we will know for sure. Hopefully this post can help someone else in the future who is dumb enough to do what I did. Thanks for the help bro chachos, saved me $150
Step 1) Turned them inside out, cleaned the area w/ rubbing alcohol, and put on one of those patch stickers from the Orvis repair kit. Aquasealed the edge of the sticker and let it sit for 8 hours.
Step 2: flip them and put a sticker on the outside, just as before, and aquaseal it.
Step 3: Put a patch over the outside sticker to add durability. Cut this from a pair of $30 clip-on boot waders. Aquasealed the bottom of the patch to act like a glue, then aquasealed the edges.
Basically now there are 3 layers of waterproofed material instead of a hole, and the outermost layer is a durable wader material mainly to protect the stickers/inside patches. Sure its ugly but the last thing I care about is how I look when fishing. Also this was easy as hell, popping a hole in your waders is not nearly as bad as I thought it was originally.